# _embedded.namespaces[].description
GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the "Pathogen Genomics" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed.

# _embedded.namespaces[].deprecationStatement
The Wellcome Sanger Institute no longer curates any of the genomes listed. All genomes on GeneDB can now be found on: PlasmoDB, FungiDB, TriTrypDB, and Wormbase Parasite.

# _embedded.namespaces[].name
Genome assembly database - RefSeq accessions

# _embedded.namespaces[].description
The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database RefSeq accessions does not extend to viroids and bacteriophage.

# _embedded.namespaces[].description
Synapse is a collaborative, open-source research platform that allows teams to share data, track analyses, and collaborate.

# _embedded.namespaces[].description
The chemical information ontology (cheminf) describes information entities about chemical entities. It provides qualitative and quantitative attributes to richly describe chemicals.

# _embedded.namespaces[].description
MediaDive is a manually curated collection of cultivation media and growth conditions. This namespace specifically references mediums.

# _embedded.namespaces[].description
Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to developmental stages.

# _embedded.namespaces[].deprecationStatement
These entries are not available any more in the last versions of the Bgee database.

# _embedded.namespaces[].description
An ontology to represent medically relevant actions, procedures, therapies, interventions, and recommendations.

# _embedded.namespaces[].description
The Ontology for Parasite Lifecycle (OPL) models the life cycle stage details of various parasites, including Trypanosoma sp., Leishmania major, and Plasmodium sp., etc.

# _embedded.namespaces[].description
The BioDeep database is a comprehensive database of metabolite information in living organisms: by aggregating metabolite information from multiple public databases and large-scale natural language text mining work, we have built a large scale knowledge network for biological knowledge interpretation. By using the BioDeep database, it is possible to query such large scale metabolic knowledge network.

# _embedded.namespaces[].description
The Signaling Gateway provides  information on  mammalian proteins involved in cellular signaling.

# _embedded.namespaces[].description
Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to anatomical structures.

# _embedded.namespaces[].deprecationStatement
These entries are not available any more in the last versions of the Bgee database.

# _embedded.namespaces[].description
This is the namespace for the archive of sequence and other files provided by NCBI e.g. in SRA and dbGaP. These files are related to objects in the sequencing data model managed under the insdc.sra namespace. 

# _embedded.namespaces[].description
MIRIAM Registry is an online resource created to catalogue collections (Gene Ontology, Taxonomy or PubMed are some examples) and the corresponding resources (physical locations) providing access to those data collections. The Registry provides unique and perennial URIs for each entity of those data collections.

# _embedded.namespaces[].deprecationStatement
The MIRIAM collection has been replaced by the identifiers.org registry. 

# _embedded.namespaces[].description
An ontology representing the model card structure, he aim of this work is to describe machine learning models to communicate information about specific details about the model (trade offs, intended users, licensing, etc.). 

# _embedded.namespaces[].name
Integrated Chemical Environment - Chemical data

# _embedded.namespaces[].description
The Integrated Chemical Environment (ICE) provides high-quality curated data and appropriate tools to support development and evaluation of new, revised, and alternative methods. ICE provides free online access to curated in vivo and in vitro test data, in silico toxicity predictions and chemical property data, reference chemical lists, and computational tools for chemical characterization and predicting toxicity.
ICE supports the following: (i) Data integration: brings together available data, including data on formulations; (ii) Results exploration: enables dynamic, graphical exploration with publication-quality graphics; (iii) Data analysis: allows characterization of data using online workflows, and (iv) FAIR data access: data are findable, accessible, interoperable, and reusable.

# _embedded.namespaces[].description
Evidence codes can be used to specify the type of supporting evidence for a piece of knowledge. This allows inference of a 'level of support' between an entity and an annotation made to an entity.

# _embedded.namespaces[].description
Tri©DB is a newly developed integrated platform functioning as a knowledge base and reporting system for cancer precision medicine. This platform harmonizes and mines cancer-related data from various aspects, presenting them on a centralized platform with enhanced accessibility, rich annotations, and robust analysis capabilities. The development of Tri©DB is aimed at meeting the needs of a broad range of researchers, thereby propelling both foundational and translational research in cancer precision medicine.

# _embedded.namespaces[].description
STATO is the statistical methods ontology. It contains concepts and properties related to statistical methods, probability distributions and other concepts related to statistical analysis, including relationships to study designs and plots.

# _embedded.namespaces[].description
The LifeWatch Metadata Catalogues plays a crucial role in managing metadata for digital objects, including Datasets, Services, Workflows and Virtual Research Environments. This catalogue serves as the central repository, ensuring that resources are accessible and reusable by stakeholders.

# _embedded.namespaces[].description
MACiE (Mechanism, Annotation and Classification in Enzymes) is a database of enzyme reaction mechanisms. Each entry in MACiE consists of an overall reaction describing the chemical compounds involved, as well as the species name in which the reaction occurs. The individual reaction stages for each overall reaction are listed with mechanisms, alternative mechanisms, and amino acids involved.