# _embedded.namespaces[].description
GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the "Pathogen Genomics" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed.

# _embedded.namespaces[].deprecationStatement
The Wellcome Sanger Institute no longer curates any of the genomes listed. All genomes on GeneDB can now be found on: PlasmoDB, FungiDB, TriTrypDB, and Wormbase Parasite.

# _embedded.namespaces[].name
Genome assembly database - RefSeq accessions

# _embedded.namespaces[].description
The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database RefSeq accessions does not extend to viroids and bacteriophage.

# _embedded.namespaces[].description
The chemical information ontology (cheminf) describes information entities about chemical entities. It provides qualitative and quantitative attributes to richly describe chemicals.

# _embedded.namespaces[].description
MediaDive is a manually curated collection of cultivation media and growth conditions. This namespace specifically references mediums.

# _embedded.namespaces[].description
The Orphanet Rare Disease ontology (ORDO) is a structured vocabulary for rare diseases, capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases.
It integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA), databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) and classifications (ICD10).

# _embedded.namespaces[].description
The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of biological and clinical investigations. The ontology will represent the design of an investigation, the protocols and instrumentation used, the material used, the data generated and the type analysis performed on it. Currently OBI is being built under the Basic Formal Ontology (BFO).

# _embedded.namespaces[].description
Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to developmental stages.

# _embedded.namespaces[].deprecationStatement
These entries are not available any more in the last versions of the Bgee database.

# _embedded.namespaces[].description
The Ontology for Parasite Lifecycle (OPL) models the life cycle stage details of various parasites, including Trypanosoma sp., Leishmania major, and Plasmodium sp., etc.

# _embedded.namespaces[].description
The BioDeep database is a comprehensive database of metabolite information in living organisms: by aggregating metabolite information from multiple public databases and large-scale natural language text mining work, we have built a large scale knowledge network for biological knowledge interpretation. By using the BioDeep database, it is possible to query such large scale metabolic knowledge network.

# _embedded.namespaces[].description
A database of annotations for published papers describing machine learning methods in biology

# _embedded.namespaces[].description
The EcoGene database contains updated information about the E. coli K-12 genome and proteome sequences, including extensive gene bibliographies. A major EcoGene focus has been the re-evaluation of translation start sites.

# _embedded.namespaces[].deprecationStatement
This resource's homepage no longer exists and a new project page cannot be found

# _embedded.namespaces[].description
Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to anatomical structures.

# _embedded.namespaces[].deprecationStatement
These entries are not available any more in the last versions of the Bgee database.

# _embedded.namespaces[].description
This is the namespace for the archive of sequence and other files provided by NCBI e.g. in SRA and dbGaP. These files are related to objects in the sequencing data model managed under the insdc.sra namespace. 

# _embedded.namespaces[].description
MIRIAM Registry is an online resource created to catalogue collections (Gene Ontology, Taxonomy or PubMed are some examples) and the corresponding resources (physical locations) providing access to those data collections. The Registry provides unique and perennial URIs for each entity of those data collections.

# _embedded.namespaces[].deprecationStatement
The MIRIAM collection has been replaced by the identifiers.org registry. 

# _embedded.namespaces[].description
An ontology representing the model card structure, he aim of this work is to describe machine learning models to communicate information about specific details about the model (trade offs, intended users, licensing, etc.). 

# _embedded.namespaces[].description
KEGG Orthology (KO) consists of manually defined, generalised ortholog groups that correspond to KEGG pathway nodes and BRITE hierarchy nodes in all organisms.

# _embedded.namespaces[].description
Synapse is a collaborative, open-source research platform that allows teams to share data, track analyses, and collaborate.

# _embedded.namespaces[].description
An ontology to represent medically relevant actions, procedures, therapies, interventions, and recommendations.

# _embedded.namespaces[].description
ProDom is a database of protein domain families generated from the global comparison of all available protein sequences.

# _embedded.namespaces[].description
The Mondo Disease Ontology (Mondo) aims to harmonize disease definitions across the world.